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GDSC SMLM 1.2 documentation
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A
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B
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C
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D
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E
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F
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G
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H
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I
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J
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L
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M
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N
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O
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P
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R
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S
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T
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U
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V
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W
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Y
Symbols
3D Results Viewer
Overview
3D Results Viewer Settings
A
ACC
Adjusted Coefficient of Determination
Advanced Spot Fit Settings
Airy PSF
Akaike Information Criterion
Analyse Fail Count Data
Analysis Plugins
Apparent Diffusion Coefficient
Approximation using a Gaussian
Astigmatic PSF Model
Astigmatism Model Manager
Available Density Score functions
Available Filters
Available Formats
B
Background
Background Estimator
Batch Load Results
Batch Save Results
Bayesian Information Criterion
Benchmark Analysis
Benchmark Filter Analysis
Benchmark Filter Parameters
Binary Display
Blink Estimator
BOBYQA
C
Calibrate Results
Calibration Plugins
Camera Bias
Camera Model Analysis
Camera Model Fisher Information Analysis
Camera Model Manager
Camera Noise Models
Camera Type
Candidate Intensity Plot
Candidate Performance Plot
Candidate Precision-Recall Plot
Classification Match Calculator
Clear Memory Results
Clear Memory Results Multi
Cluster Molecules
Clustering Algorithms
CMAES
Comparison Metrics
Composite ROIs
Compound Molecules
Computing the Likelihood
Configuration Wizard 1: Introduction
Configuration Wizard 2: Camera type
Configuration Wizard 3: Pixel Pitch
Configuration Wizard 4: Gain
Configuration Wizard 5: Exposure Time
Configuration Wizard 6: Peak Width
Confined Diffusion
Convert Results
Create Benchmark Data
Create Data
Create Fail Count Data
Create Filters
Create Model
Create Simple Data
Create SMLM Tools Config
Create Spot Data
Create Track Data
Crop Results
Crosstalk Activation Analysis
Crosstalk Correction
Cubic Spline Manager
D
Dark Time Analysis
Data Calibration
DBSCAN
Density Estimator
Density Image
Depth Mask
Diffraction Limit of Light Microscopy
Diffusion Rate Test
Doublet Analysis
Doublet Filter Analysis
Draw Clusters
Drawing Cluster Centroids
Drift Calculation
Drift Calculator
Drift Curve
Drift File
Dynamic Trace Molecules
E
EM-CCD Probability Model
EM-Gain Analysis
EM-Gain PMF
Enrichment Search
Estimating Q
Evolution using a Genetic Algorithm
Expanding Filter Sets
Exporting Datasets
F
F-score
Fail Count Manager
Fast Maximum Likelihood Estimation
FDR
Fiducial Markers
File Output
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[1]
Filter Analysis
Filter Analysis File
Filter Molecules
Filter Optimisation
Filter Results
Filter Spot Data
Filter Spot Data Batch
Filtering Parameters
FIRE Q Estimation
Fit Benchmark Data
Fit Configuration
Fit Maxima
Fit Solvers
Fit Spot Data
Fitting Calibration
Fitting Images
Fitting Limits
Fitting Parameters
Fitting Plugins
Fitting the correlation curve
FNR
Fourier Image Resolution
FPR
Free Filter Results
G
Gaussian Fit
Gaussian PSF
Gaussian PSF Equation
Gaussian PSF Parameters
GDSC Single Molecule Light Microscopy SMLM ImageJ Plugins
GDSC SMLM View Menu
Google Analytics Details
Grid Walk simulation
H
Histogram normalisation
I
Image Analysis
Image Background
Image Calibration
Image Examples
Image Kernel Filter
Image Output
Image Overlay
Image PSF
Image Reconstruction
Image Residuals
ImageJ Plugins Overview
Imaging Calibration Parameters
Informedness
Install SMLM Toolset
Install using ImageJ version 1
Install using ImageJ2/Fiji
Installation
Interactive Q-Estimation
Interactive Results Match Table
Interactive Results Table
Interactive View
Interlaced Data
Issues
Iterate Filter Analysis
J
Jaccard
Jump Distance Analysis
L
Least Squares Estimation
Live Image Display
Load Benchmark Data
Load Custom Templates
Load Fail Count Data
load localisations
Load Standard Templates
Loading Data
Localisation Fitting Method
Localisation Precision
Localisation Precision for Least Squares Fitting
Localisation Precision for Maximum Likelihood Fitting
Localisation Records
LVM Maximum Likelihood Estimation
M
Markedness
Maxima Identification
Maxima Identification Parameters
Maximum Likelihood Estimation
MCC
Mean-Variance Test
Mean-Variance Test EM-CCD
Median Filter
Memory Output
Model Plugins
Molecule Tracing
MSD and Precision Correction
MSD Correction
Multiple Input Images
Multiple Peak Fitting Parameters
N
Neighbour Analysis
Neighbour Histogram
Noise Estimation within the Peak Fit Plugin
Noise Estimator
Noise subtraction
NPV
Nucleus Mask
O
OPTICS
Optimisation Details
Optimisation Overview
Overlay
Overlay Image
Overlay Results
Overview
P
Parameter Estimation
Particle Distribution
PC PALM Plugins
PC-PALM Analysis
PC-PALM Clusters
PC-PALM Fitting
PC-PALM Load Results
PC-PALM Molecules
PC-PALM Save Results
PC-PALM Spatial Analysis
Peak Fit
Peak Fit Preview
Peak Fit Series
Peak Fitting
Performance
Pixel Filter
Plot Fail Count Data
Plugin Interface
Point Spread Function
Poisson Noise Model
Poisson-Gamma-Gaussian Noise Model
Poisson-Gaussian Noise Model
Powell
Powell Adapter
Powell Bounded
Precision
Precision Correction
PSF Calculator
PSF Combiner
PSF Creator
Gaussian Fitting
Stack Alignment
PSF Drift
PSF Estimator
PSF HWHM
Pulse Activation Analysis
Pulse Analysis
R
Random Move simulation
Range Search
Ranking Filters
Recall
Recall Curve
Reference Stack Alignment
References
Remove Loaded Templates
Rename Results
Rendering Options
Resequence Results
Reset Display
Residence Time Analysis
Results Files
Results Manager
Input Options
Output Options
Results Match Calculator
Results Parameters
Results Plugins
Ripley's L-plot
ROI Crop Results
Run Mode: PC-PALM
Run Mode: Simulation
Running Peak Fit
S
Sampled Statistics
Save Fail Count Data
save localisations
Saving the Drift
sCMOS Analysis
sCMOS Camera Simulation
Score Filter
Search Methods
Selecting a Two Spot Model
Selecting the Best Fit
Sensitivity Analysis
Show Results Header
Show SMLM Tools
Signal Precision
Simple Fit
Simulated Crosstalk
Simulation
Simulation Mode
Smart Spot Ranking
SMLM Macro Extensions
Smooth Image
Smoothing within the Peak Fit plugin
Split Results
Spot Analysis
Spot Analysis Add
Spot Analysis Workflow
Spot Filter Settings
Spot Filter Type
Spot Finder
Spot Finder Preview
Spot Finder Series
Spot Fit Tool
Spot Inspector
Spurious Correlation Q Correction
Stability Issues
Step Search
Sub-Image Alignment
Summarise Results
Summary Data Histograms
T
Table Output
TC-PALM Analysis
Template Manager
Threshold methods
TIFF Series Viewer
TNR
Tools Plugins
Toolset Plugins
Trace Diffusion
MSD Correction
Trace Diffusion Extensions
Trace Diffusion Multi
Trace Exporter
Trace Length Analysis
Trace Match Calculator
Trace Molecules
Optimisation
Trace Molecules (Multi)
Trace Molecules Plugin
Trace Viewer
Track Population Analysis
Track Population Importer
Tracking Identifiers
Translate Results
U
Update Results Bounds
Usage Data
Usage Tracking
User Preferences
V
View Image Example for Template
View Template
W
Weighted Least Squares Estimation
Which Fit Solver to Choose
Y
Yeast Mask
Quick search
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